Projects

GDAN Tumor Molecular Pathology
Pretrained models classify non-TCGA cancer samples into molecular subtypes defined by TCGA.
CALYPR
A hybrid cloud and on-prem genomics platform for data integration, workflow execution, and analysis.
CALYPR
AnVIL
A cloud platform for accessing, managing, and analyzing genomic data through NHGRI’s AnVIL data commons.
AnVIL
SMC Het
A DREAM challenge to compare methods for reconstructing tumor subclones and their evolution.
SMC Het
GRIP
A graph database and query platform that works across multiple storage back ends.
GRIP
BMEG
A graph model for connecting biomedical data and evidence to support cross-domain discovery.
BMEG
DREAM-SMC
Somatic Mutation Calling
DREAM-SMC
DREAM-SMC-RNA
RNA Fusion Calling and Isoform Quantification
DREAM-SMC-RNA
Funnel
A distributed task execution system for cloud and high-performance computing workflows.
Funnel
MC3
A uniform reanalysis of TCGA exome data to support cross-cancer mutation studies.
MC3