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Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
Adam D Ewing
,
Kathleen E Houlahan
,
Yin Hu
,
Kyle Ellrott
,
Cristian Caloian
,
Takafumi N Yamaguchi
,
J Christopher Bare
,
Christine P’ng
,
Daryl Waggott
,
Veronica Y Sabelnykova
,
others
Cite
Global optimization of somatic variant identification in cancer genomes with a global community challenge
Paul C Boutros
,
Adam D Ewing
,
Kyle Ellrott
,
Thea C Norman
,
Kristen K Dang
,
Yin Hu
,
Michael R Kellen
,
Christine Suver
,
J Christopher Bare
,
Lincoln D Stein
,
others
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Comprehensive molecular characterization of clear cell renal cell carcinoma
Cancer Genome Atlas Research Network Analysis working group: Baylor College of Medicine Creighton Chad J. 1 2 Morgan Margaret 1 Gunaratne Preethi H. 1 3 Wheeler David A. 1 Gibbs Richard A. 1
,
BC Cancer Agency Gordon Robertson A. 4 Chu Andy 4
,
Broad Institute Beroukhim Rameen 5 6 Cibulskis Kristian 6
,
Brigham & Women’s Hospital Signoretti Sabina 7 54 59
,
Brown University Vandin Hsin-Ta Wu Fabio 8 8 Raphael Benjamin J. 8
,
University of Texas MD Anderson Cancer Center Verhaak Roel GW 9 Tamboli Pheroze 10 Torres-Garcia Wandaliz 9 Akbani Rehan 9 Weinstein John N. 9
,
Memorial Sloan-Kettering Cancer Center Reuter Victor 11 Hsieh James J. 12 Rose Brannon A. 11 Ari Hakimi A. 12 Jacobsen Anders 13 Ciriello Giovanni 13 Reva Boris 13
,
National Cancer Institute Ricketts Christopher J. 14 Marston Linehan W. agibbs@ bcm. edu 14 c
,
University of California Santa Cruz Stuart Joshua M. 15
,
Chapel Hill Kimryn Rathmell W. 16 University of North Carolina
,
others
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Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas
Larsson Omberg
,
Kyle Ellrott
,
Yuan Yuan
,
Cyriac Kandoth
,
Chris Wong
,
Michael R Kellen
,
Stephen H Friend
,
Josh Stuart
,
Han Liang
,
Adam A Margolin
Cite
The cancer genome atlas pan-cancer analysis project
John N Weinstein
,
Eric A Collisson
,
Gordon B Mills
,
Kenna R Shaw
,
Brad A Ozenberger
,
Kyle Ellrott
,
Ilya Shmulevich
,
Chris Sander
,
Joshua M Stuart
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The somatic genomic landscape of glioblastoma
Cameron W Brennan
,
Roel GW Verhaak
,
Aaron McKenna
,
Benito Campos
,
Houtan Noushmehr
,
Sofie R Salama
,
Siyuan Zheng
,
Debyani Chakravarty
,
J Zachary Sanborn
,
Samuel H Berman
,
others
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The UCSC cancer genomics browser: update 2013
Mary Goldman
,
Brian Craft
,
Teresa Swatloski
,
Kyle Ellrott
,
Melissa Cline
,
Mark Diekhans
,
Singer Ma
,
Chris Wilks
,
Josh Stuart
,
David Haussler
,
others
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Weinstein JN
Cancer Genome Atlas Research Network
,
others
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Comprehensive genomic characterization of squamous cell lung cancers
Cancer Genome Atlas Research Network
,
others
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Comprehensive molecular characterization of human colon and rectal cancer
Cancer Genome Atlas Network
,
others
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